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authorTobias Klauser <tklauser@distanz.ch>2013-01-16 10:29:57 +0100
committerTobias Klauser <tklauser@distanz.ch>2013-01-16 10:29:57 +0100
commit8efeeffa28bb186a4fe89c8df5a80b28518adf93 (patch)
tree74edfab1d1ece38e4558dd6154a2099f6ab60757 /scripts
parent46ce99d01fb63b54ceca4e4558daa61ad1f03c2c (diff)
scripts/csv2sto.py: Allow to specify muscle names on command line
Diffstat (limited to 'scripts')
-rwxr-xr-xscripts/csv2sto.py31
1 files changed, 23 insertions, 8 deletions
diff --git a/scripts/csv2sto.py b/scripts/csv2sto.py
index 0f0e697..3a1b363 100755
--- a/scripts/csv2sto.py
+++ b/scripts/csv2sto.py
@@ -16,16 +16,18 @@ DEFAULT_NAME = 'control'
DEFAULT_MAXTIME = 100.0
def usage():
- print """usage: %s [OPTION...] CSV-FILE STO-FILE
+ print("""usage: {} [OPTION...] CSV-FILE... STO-FILE
- -f force overwrite of existing files
- -n name of the sto file (default: %s)
- -T N scale time such that it goes from 0.0 to N
- -h show this help and exit""" % (DEFAULT_NAME, os.path.basename(sys.argv[0]))
+ -f force overwrite of existing files
+ -m NAMES use names from comma-separated list NAMES to name muscles instead
+ of CSV file name (# of names in list must match # of CSV files)
+ -n name of the activation data in sto file (default: {})
+ -T N scale time such that it goes from 0.0 to N
+ -h show this help and exit""".format(DEFAULT_NAME, os.path.basename(sys.argv[0])))
def main():
try:
- opts, args = getopt.getopt(sys.argv[1:], "fn:hT:")
+ opts, args = getopt.getopt(sys.argv[1:], "fm:n:hT:")
except getopt.GetoptError, err:
print(str(err))
usage()
@@ -36,11 +38,14 @@ def main():
sys.exit(-1)
overwrite = False
+ muscles = None
name = DEFAULT_NAME
maxtime = DEFAULT_MAXTIME
for o, a in opts:
if o == '-f':
overwrite = True
+ elif o == '-m':
+ muscles = [ x.strip() for x in a.split(',') ]
elif o == '-n':
name = a
elif o == '-T':
@@ -56,6 +61,11 @@ def main():
if not os.path.exists(f_csv):
print "Error: CSV file %s does not exist" % f_csv
sys.exit(-1)
+
+ if muscles and len(muscles) != len(fs_csv):
+ print("Error: number of names ({}) provided does not match number of CSV files ({})".format(len(muscles), len(fs_csv)))
+ sys.exit(-1)
+
f_sto = args[-1]
if not overwrite and os.path.exists(f_sto):
print "Error: STO file %s already exists" % f_sto
@@ -95,9 +105,14 @@ def main():
fd_sto.write("endheader\n")
fd_sto.write("time")
+ i = 0
for f_csv in fs_csv:
- colname = os.path.splitext(os.path.basename(f_csv))[0]
- print "[+] Adding muscle %s..." % colname
+ if muscles:
+ colname = muscles[i]
+ i += 1
+ else:
+ colname = os.path.splitext(os.path.basename(f_csv))[0]
+ print("[+] Adding muscle {}...".format(colname))
fd_sto.write("\t" + colname)
fd_sto.write("\n")